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Comparative analysis of the complete plastomes of nine Pimpinella species (Apiaceae) from China

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成果类型:
期刊论文
作者:
Wang, Zhixin;Cao, Limin;Liu, Jianhui;He, Xingjin
作者机构:
[Wang, Zhixin; Cao, Limin; Liu, Jianhui] Hengyang Normal Univ, Coll Life Sci & Environm, Hunan Key Lab Conservat & Utilizat Biol Resources, Hengyang, Hunan, Peoples R China.
[He, Xingjin] Sichuan Univ, Coll Life Sci, Key Lab Bioresources & Ecoenvironm, Minist Educ, Chengdu, Sichuan, Peoples R China.
语种:
英文
关键词:
chloroplast DNA;circular DNA;leucine;nadh dehydrogenase subunit 2;plant protein;protein tic 214;ribosomal protein l14;ribosomal protein l16;ribosomal protein l2;ribosomal protein l22;ribosomal protein l23;ribosomal protein l36;ribosomal protein s12;ribosomal protein s3;ribosomal protein s7;ribosomal protein s8;ribosomal protein S9;ribosome RNA;transfer RNA;translation initiation factor if1;unclassified drug;ycf2 protein;Article;China;chloroplast genome;codon usage;complete plastomes;DNA base composition;DNA extraction;DNA sequence;gene number;genetic distance;genome size;high throughput sequencing;inverted repeat boundary;molecular genetic phenomena and functions;nonhuman;phylogeny;Pimpinella;Pimpinella candolleana;Pimpinella diversifolia;Pimpinella purpurea;Pimpinella rhomboidea;Pimpinella rubescens;Pimpinella scaberula;Pimpinella smithii;Pimpinella thellungiana;Pimpinella valleculosa;plant genome;RNA editing site
期刊:
PEERJ
ISSN:
2167-8359
年:
2023
卷:
11
页码:
e14773
基金类别:
This work was supported by the National Natural Science Foundation of China (grant no. 31800169). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
机构署名:
本校为第一机构
院系归属:
生命科学与环境学院
摘要:
Pimpinella L. is one of the large genera in the Apiaceae family. In a previous study, the molecular phylogenies of Pimpinella were explored using nuclear ribosomal DNA internal transcribed spacers (ITS) and several chloroplast DNA segments. There have been few studies conducted on chloroplast genomes in Pimpinella, which has limited systematic understanding of this genus. We assembled the complete chloroplast genomes of nine Pimpinella species from China using data generated from next generation sequencing (NGS). The chloroplast (cp) DNA used w...

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